BTC555 Proteins and Nucleic acids
Syllabus
Spring
Lectures 4:00 -6:00 pm Thursday (S 125)
Laboratories 9:00 am - 5:00 pm Wednesday (Building D, SRC)
Instructor: Dr. Alexandra VanKley
Teaching Assistants :  Darya
Course Description

3 semester hours. The goal of the course is to provide a critical understanding of the relationship between structure and function of biological macromolecules such as proteins and nucleic acids. The laboratory provides hands-on experience with state-of-the-art equipment used in the biotech industry. Methods presented will include PCR, Plasmid purification, Gel electrophoresis (Agarose, SDS,2D), Restriction Digestion, Sequencing, Denaturing Gradient Gel Electrophoresis, Bradford, ELISA, Chromatography and etc. The laboratory experiments will allow students to gain experience in using computer applications related to the determination of the structures and properties of biological molecules and recent bioinformatics tools. The class meets for 2 hours of lecture each week. An additional 4-8 hours per week is spent learning the laboratory techniques.

Important Policies

Add/Drop Policy. Students can add up until the 4th class day. Movement into and out of classes after the 4th class day requires approval of the Department Chair. Students can drop until mid-semester without a WP or WF. Drops after mid-semester require approval of the Dean. You are responsible for your enrollment status with the college.

Attendance Policy

Regular or punctual attendance is expected but in this class attendance is not taken at any class or laboratory meeting. You are responsible for obtaining any information distributed during those times.

Academic Dishonesty  (Cheating & Plagiarism)

Academic dishonesty will not be tolerated. Dishonesty will result in assignment of a failing grade on that exercise or examination.
(
Plagiarism is the act of obtaining or attempting to obtain credit for academic work by representing the work of another as one's own without the necessary and appropriate acknowledgment.)
Cheating is the act of obtaining or attempting to obtain credit for academic work by using dishonest means: submitting as one's own work an examination, paper, research which has been purchased, borrowed, or stolen; or fabricating data; or using of electronic devices, not specifically authorized by the instructor during an examination)

Excused absences

Please consult the SFASU General Bulletin for the excused absence policy. Laboratory Schedule

The class will meet in the Distance Learning class for a short pre-lab (introduction). You are expected to complete the hands-on laboratory work during the scheduled  meeting times.

Required Materials

Laboratory notebook. Roaring Spring Cat# 77649, quad-ruled with duplicate pages. Available at the University Bookstore.

Textbooks

Required

Biochemistry (3rd Edition)
by Donald Voet & Judith Voet

Chapters 4-9, 29

Recommended but not required

DNA Structure and Function
 by Richard R. Sinden
 
Introduction to Protein Structure
by Branden C. & Tooze J.
Introduction to Protein Structure
Introduction to Protein Architecture: The Structural Biology of Proteins
by Arthur M. Lesk
   
Essentials of Writing Biomedical Research
Papers 2nd edition
by Mimi Zeiger
 
 
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Evaluation and Grading

Laboratory Notebook/Performance
10%
Midterm examinations
2X20%
Lab quizzes
10%
Lecture quizzes
10%
Laboratory Reports
30%
Total
100%
89 – 100% =A 79 – 88% =B
69 – 78% =C
59 – 68% =D

Laboratory Notebook/Performance

Notebooks will be signed after every laboratory by teaching assistants. Notebook should be hardbound. Notebook must represent real-time data, methods and results. There should be scratch-outs, scribbles, notes, drawings, calculations, etc. Notebook must include: date, title of experiment, purpose of experiment and original data. Notebook should include vendor and lot numbers of reagents used and the name and model numbers of the equipment used. Notebook must contain original figures and data. Performance will be based on your punctuality, preparation, time management and participation. Learn more follow this link How to Develop a Laboratory Notebook

Laboratory Reports

See the schedule of topics for the due dates. Must be typed (double-spaced). Include near publication quality figures, tables.
Use publication format, include:

Title page
Abstract
(overall purpose and conclusion)
Introduction
(literature review pertaining to the method of study and the compound(s) being studied)
Materials & Methods
(accurate, detailed written text explaining what was actually done and what
equipment was used)
Results
(results as obtained)
Discussion
(summary in context of the original purpose)
References
Appendix (optional)
Copy of laboratory notebook pages for the particular experiment section
 
Examinations

See the schedule for dates and times. Format will include but is not limited to multiple choice, short answer and essay type questions. Context will include any material covered during lecture or laboratory.

Lab quizzes

Before each lab there will be a short quiz which will cover the material required to be studied before the lab (lab protocols and required reading will be available on the web). Lab quizzes will be a combination of multiple choice, matching, short answer, and practical questions. If you miss a lab quiz, you will not be allowed to make it up unless you have a valid excuse.

Lecture quizzes

Before each lecture there will be a short quiz which will cover the material learned since the previous quiz (required and recommended reading: chapters and articles will be available on the web). Lecture quizzes will be a combination of multiple choice, matching, short answer, and practical questions. If you miss a lecture quiz, you will not be allowed to make it up unless you have a valid excuse.